| #R007 | chemical | operational | mandatory | Annual Average NAL Zinc | wastewater | requirement | 0.26 mg/L | Annual Average Numeric Action Level value | Only applicable to industrial storm water discharges | high |
| #R008 | chemical | operational | mandatory | Annual Average NAL Copper | wastewater | requirement | 0.0332 mg/L | Annual Average Numeric Action Level value | Only applicable to industrial storm water discharges | high |
| #R009 | physical | operational | mandatory | Instantaneous Maximum NAL TSS | wastewater | requirement | 400 mg/L | Instantaneous Maximum Numeric Action Level value | Two or more analytical results exceed value in a reporting year | high |
| #R010 | physical | operational | mandatory | Annual Average NAL TSS | wastewater | requirement | 100 mg/L | Annual Average Numeric Action Level value | Industrial storm water discharges | high |
| #R011 | chemical | operational | mandatory | Annual Average NAL Total Oil & Grease | wastewater | requirement | 15 mg/L | Annual Average Numeric Action Level value | Industrial storm water discharges | high |
| #R012 | chemical | operational | mandatory | Instantaneous Maximum NAL Total Oil & Grease | wastewater | requirement | 25 mg/L | Instantaneous Maximum Numeric Action Level value | Industrial storm water discharges | high |
| #R013 | chemical | operational | mandatory | Annual Average NAL Lead | wastewater | requirement | 0.262 mg/L | Annual Average Numeric Action Level value | Industrial storm water discharges | high |
| #R014 | chemical | operational | mandatory | Annual Average NAL Chemical Oxygen Demand | wastewater | requirement | 120 mg/L | Annual Average Numeric Action Level value | Industrial storm water discharges | high |
| #R015 | chemical | operational | mandatory | Annual Average NAL Biochemical Oxygen Demand | wastewater | requirement | 30 mg/L | Annual Average Numeric Action Level value | Industrial storm water discharges | high |
| #R016 | physical | treatment | mandatory | Ballast and Flood Water Settleable Solids (Monthly) | wastewater | requirement | 1.0 ml/L | Average Monthly Effluent Limitation | Discharge of ballast and flood water from floating drydocks | high |
| #R017 | physical | treatment | mandatory | Ballast and Flood Water Turbidity (Monthly) | wastewater | requirement | 75 NTU | Average Monthly Effluent Limitation | Discharge of ballast and flood water from floating drydocks | high |
| #R018 | design | operational | mandatory | Compliance Storm Event Frequency | other | requirement | 5 year | Treatment BMPs for any pollutant shall be designed for no less than a 5-year frequency | Applied to 24-hour storm events | high |
| #R019 | chemical | health | mandatory | Receiving Water Un-ionized Ammonia | aquatic life | requirement | 0.025 mg/l (as N) | The discharge of wastes shall not cause concentrations in receiving waters to exceed this level | Bays, Estuaries, and Coastal Lagoons | high |
| #R020 | chemical | health | mandatory | Receiving Water Dissolved Oxygen Minimum | aquatic life | requirement | >= 5.0 mg/L | The dissolved oxygen concentration shall not at any time be less than this value | Bays, Estuaries, and Coastal Lagoons | high |
| #R021 | physical | health | mandatory | Receiving Water pH Objective | aquatic life | requirement | 7.0 - 9.0 Standard Units | The pH shall not be depressed below 7.0 nor raised above 9.0 | Bays, Estuaries, and Coastal Lagoons | high |
| #R022 | microbiological | health | mandatory | Ocean Water Total Coliform Standard | recreational water | requirement | 1000 per 100 ml | 30-day Geometric Mean for waters designated for contact recreation (REC-1) | Within a zone bounded by the shoreline and 1,000 feet or 30-foot depth contour | high |
| #R023 | chemical | treatment | mandatory | Drydock Instantaneous Maximum Oil and Grease | wastewater | requirement | 75 mg/L | Instantaneous Maximum Effluent Limitation | Discharges of ballast and flood water from floating drydocks | high |
| #R024 | chemical | treatment | mandatory | Ballast and Flood Water Oil and Grease (Weekly) | wastewater | requirement | 40 mg/L | Weekly Average Effluent Limitation | Discharge of ballast and flood water from floating drydocks | high |
| #R025 | physical | treatment | mandatory | Ballast and Flood Water Settleable Solids (Weekly) | wastewater | requirement | 1.5 ml/L | Weekly Average Effluent Limitation | Discharge of ballast and flood water from floating drydocks | high |
| #R026 | physical | treatment | mandatory | Ballast and Flood Water Settleable Solids (Instantaneous Maximum) | wastewater | requirement | 3.0 ml/L | Instantaneous Maximum Effluent Limitation | Discharge of ballast and flood water from floating drydocks | high |
| #R027 | physical | operational | mandatory | pH Numeric Action Level (NAL) Range | other | requirement | < 6.0 or > 9.0 pH units | Instantaneous Maximum NAL range | Occurs when two or more analytical results exceed range within the reporting year | high |
| #R028 | microbiological | health | mandatory | Receiving Water E. coli Geometric Mean Limit | recreational water | requirement | <= 100 CFU/100 mL | Six-week rolling geometric mean concentration for REC-1 waters | Salinity <= 1 ppt 95 percent or more of the time | high |
| #R029 | physical | treatment | mandatory | Ballast and Flood Water Turbidity (Weekly) | wastewater | requirement | 100 NTU | Weekly Average Effluent Limitation | Discharge of ballast and flood water from floating drydocks | high |
| #R030 | physical | treatment | mandatory | Ballast and Flood Water Turbidity (Instantaneous Maximum) | wastewater | requirement | 225 NTU | Instantaneous Maximum Effluent Limitation | Discharge of ballast and flood water from floating drydocks | high |
| #R031 | microbiological | health | mandatory | Receiving Water Enterococci Geomean Limit | recreational water | requirement | <= 30 CFU/100 mL | Six-week rolling geometric mean concentration for REC-1 waters | Salinity > 1 ppt five percent or more of the time during the calendar year | high |
| #R032 | microbiological | health | mandatory | Receiving Water E. coli Statistical Threshold Value | recreational water | requirement | 320 CFU/100 mL | Statistical threshold value (STV) for REC-1 waters | Salinity <= 1 ppt 95 percent or more of the time; not to be exceeded more than 10 percent of samples in a calendar month | high |
| #R033 | microbiological | health | mandatory | Shellfish Harvesting Total Coliform Median | recreational water, other | requirement | <= 70 organisms per 100 mL | Median total coliform concentration throughout the water column | Waters where shellfish harvesting for human consumption, commercial, or sports purposes is designated | high |
| #R034 | microbiological | health | mandatory | Ocean Water Fecal Coliform Geomean Standard | recreational water | requirement | <= 200 per 100 ml | 30-day Geometric Mean for REC-1 ocean waters | Within specified shoreline zones or designated water contact sports areas | high |
| #R035 | microbiological | health | mandatory | Ocean Water Enterococcus Geomean Standard | recreational water | requirement | <= 35 per 100 ml | 30-day Geometric Mean for REC-1 ocean waters | Within specified shoreline zones or designated water contact sports areas | high |
| #R036 | microbiological | health | mandatory | Ocean Water Enterococcus Single Sample Maximum | recreational water | requirement | 104 per 100 ml | Single Sample Maximum for REC-1 ocean waters | Within specified shoreline zones or designated water contact sports areas | high |
| #R037 | operational | operational | mandatory | Flow Measurement Accuracy | other | requirement | <= 5 percent | Maximum deviation from true discharge rates | Flow measurement devices for monitored discharges | high |
| #R038 | microbiological | health | mandatory | San Diego Bay E. coli Density Limit | aquatic life, other | requirement | <= 7 organisms per mL | Density in waters used for whole fish handling | Not to exceed in more than 20 percent of any 20 daily consecutive samples | high |
| #R039 | microbiological | health | mandatory | Ocean Water Total Coliform Single Sample Maximum | recreational water | requirement | <= 10000 per 100 ml | Single Sample Maximum for REC-1 ocean waters | Within specified shoreline zones or designated water contact sports areas | high |
| #R040 | physical | health | mandatory | Ocean Water pH Change Limit | aquatic life | requirement | <= 0.2 units | Maximum change from natural pH | Ocean waters | high |
| #R041 | operational | reporting | mandatory | Duplicate Chemical Analysis Frequency | other | requirement | >= 10 percent | Minimum frequency for conducting duplicate chemical analyses | Laboratory analyses for monitoring program | high |
| #R042 | operational | reporting | mandatory | Toxicity Test Maximum Holding Time | aquatic life | requirement | <= 72 hours | Maximum time between the conclusion of sample collection and test initiation | Chronic toxicity testing | high |